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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12358744_12360718_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12358744 - 12360718
Intron Length:
1975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGGTAAGG
5'SS Class:
weak_major
3'SS Sequence:
ATTGTCACCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
GGCCACTCAATT
Flanking Amino Acid:
PLQPPSLEEKHAGSIFLCHQ
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.2
0.12
1.1
49
41.6
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
70.5
0.46
0.9
63.7
37.4
Minor 5ss
27.8
-2.5
3.1
30.9
36.6
Minor BPS
47.7
-0.1
1.7
60.73
42.5

Associated Gene:

Gene:
LRRC43
Ensembl Gene ID:
ENSAPLG00000006735
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035406
12353660 - 12360991
7332