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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1236569_1290957_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1236569 - 1290957
Intron Length:
54389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
CQRKSAASENSADGPSSEIM
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.9
38.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.7
0.87
0.7
81.4
36
Minor 5ss
34.5
-1.8
3.3
49
47.2
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012171
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027628
1144737 - 1367322
222586
ENSAPLT00000040969
1144737 - 1367322
222586
ENSAPLT00000024447
1144737 - 1372582
227846
ENSAPLT00000037047
1144737 - 1430941
286205
ENSAPLT00000022168
1144737 - 1395385
250649
ENSAPLT00000034307
1144737 - 1430941
286205
ENSAPLT00000012672
1144737 - 1397561
252825
ENSAPLT00000028392
1144737 - 1351737
207001
ENSAPLT00000048397
1144737 - 1434770
290034