About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12368126_12368274_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12368126 - 12368274
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTACTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTATTTTACTC
Flanking Amino Acid:
WQVVIGARVDMTTKQQEYLR
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
80
34.8
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
75.3
0.57
0.8
67.5
38.7
Minor 5ss
43.5
-0.7
3
62.3
42.4
Minor BPS
58.2
0.24
1.6
69.89
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006817
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007073
12367130 - 12369845
2716