About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12368386_12368809_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12368386 - 12368809
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
GATTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTTCCTGTAACT
Flanking Amino Acid:
LIEALTEYTKAVYTLVSLYK
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
68
0.45
1
57.8
39
Major PPT
80.2
0.68
0.9
73.5
36.6
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
67.3
0.62
2
89.23
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006817
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007073
12367130 - 12369845
2716