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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12369410_12369798_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12369410 - 12369798
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCCT
5'SS Class:
major
3'SS Sequence:
TTTGTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TGTGCCTGACCC
Flanking Amino Acid:
RWLRSCRSLLRRGFPVLAAA
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.3
58.1
46.4
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
37.9
-1.4
3.6
57.6
46.6
Minor BPS
53.8
0.1
1.9
68.01
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006817
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007073
12367130 - 12369845
2716