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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12377422_12377980_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12377422 - 12377980
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATTTCTTTGAAT
Flanking Amino Acid:
EFMSGIDTDKVNNYIEDCIA
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
74.9
0.56
0.9
73.5
35.8
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
73.3
0.81
1.3
86.48
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007168
12375724 - 12383714
7991