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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12378355_12380035_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12378355 - 12380035
Intron Length:
1681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGT
5'SS Class:
strong_major
3'SS Sequence:
TGGATTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGAGATCTAACC
Flanking Amino Acid:
KAKIISAAFEERHHAKTVGE
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
69.5
42.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
72.7
0.51
0.9
70.3
41.2
Minor 5ss
27
-2.6
3.3
38.6
46.5
Minor BPS
46.6
-0.2
1.9
57.79
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007168
12375724 - 12383714
7991