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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12380230_12380938_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12380230 - 12380938
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CTGCATTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CAGTCCTTACCA
Flanking Amino Acid:
LIDEIYGIQNTYVKLPPEKF
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.6
35.3
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
68.6
0.42
1.1
64
41.3
Minor 5ss
35.1
-1.7
2.8
49.5
40.3
Minor BPS
63.8
0.43
1.7
68.17
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007168
12375724 - 12383714
7991