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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12383527_12383612_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12383527 - 12383612
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGGGG
5'SS Class:
major
3'SS Sequence:
TGTCGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACCCAG
U12 Branch Point Sequence:
CCAGCCGCACCG
Flanking Amino Acid:
EVLDKCAGTKAIVWDEYLTG
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
55
44.1
Major BPS
41.4
-0.5
1.5
47.8
37.7
Major PPT
69.6
0.44
0.9
62.3
34.7
Minor 5ss
22.1
-3.2
3.4
28.8
43.7
Minor BPS
35.7
-1.2
2.3
35.42
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007168
12375724 - 12383714
7991