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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12384517_12385230_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12384517 - 12385230
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAATC
5'SS Class:
major
3'SS Sequence:
GCTGATCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CCCTGCTTGACT
Flanking Amino Acid:
GNEEETNNYDSEEESLSKKK
Intron Amino Acid Position:
1338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
74
34.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
73.4
0.53
1
65.5
40.7
Minor 5ss
43.5
-0.7
3
60.5
44.2
Minor BPS
58
0.33
1.9
70.4
47

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816