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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12386582_12387141_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12386582 - 12387141
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTCTCTTTAAAG
Flanking Amino Acid:
NEPLTVTSPSGDIAANLLQD
Intron Amino Acid Position:
1280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
68.4
36.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
81
0.7
1
82.3
26.9
Minor 5ss
29.1
-2.4
3.4
37.5
47.2
Minor BPS
71.5
0.54
1.4
72.3
40.7

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816