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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12387299_12387589_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12387299 - 12387589
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGAG
5'SS Class:
strong_major
3'SS Sequence:
GTAACTCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTGATGTAACT
Flanking Amino Acid:
DEELEKLRNEITVLRGENAS
Intron Amino Acid Position:
1228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
74.7
35.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73.2
0.52
1
65.3
40.8
Minor 5ss
31.4
-2.1
3.2
39.6
46.4
Minor BPS
48.4
-0
2.2
72
45.3

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816