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Intron Name: Anas_platyrhynchos_platyrhynchos_16_12387708_12392822_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12387708 - 12392822

Intron Length:

5115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

GGTTTTCTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTGGAT

U12 Branch Point Sequence:

CCTTGGATGATT

Flanking Amino Acid:

LNNQLLEMKKRESTLKKEID

Intron Amino Acid Position:

1188

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

99.2

1.16

0.6

9.5

Major BPS

59.1

0.23

1.4

60.7

45.9

Major PPT

80.1

0.68

0.8

77.9

36.6

Minor 5ss

46.1

-0.4

2.8

66.9

44.4

Minor BPS

40.1

-0.7

2.5

59.01

45.1

Associated Gene:

Gene:

CLIP1

Ensembl Gene ID:

ENSAPLG00000007117

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007436

12384294 - 12440109

55816