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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12392876_12396463_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12392876 - 12396463
Intron Length:
3588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTGG
5'SS Class:
major
3'SS Sequence:
GTTTGTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
GGTGTATTAACT
Flanking Amino Acid:
SRDEVTSHQKLEEERSVLNN
Intron Amino Acid Position:
1171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
54.6
45
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
76.2
0.59
0.9
73.5
41.9
Minor 5ss
34.1
-1.8
3.6
46.4
49
Minor BPS
58.6
0.35
1.7
74.45
41.9

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816