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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12396585_12399694_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12396585 - 12399694
Intron Length:
3110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
CCTATGGTAACA
Flanking Amino Acid:
NKKVEELRKEFEALKLAAAQ
Intron Amino Acid Position:
1130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
85.6
30.4
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
78.7
0.65
0.8
73
31.8
Minor 5ss
44.2
-0.6
2.9
66.4
38.5
Minor BPS
42
-0.6
2.5
54.58
44.7

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816