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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12399802_12401098_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12399802 - 12401098
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCATA
5'SS Class:
major
3'SS Sequence:
TTTCCTCTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ATTTGTGTAATG
Flanking Amino Acid:
RQTNEKLQNELDMLKQNNLK
Intron Amino Acid Position:
1095

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1.1
78
38.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79
0.65
0.9
83.4
25.4
Minor 5ss
48.5
-0.1
2.6
66.3
44.7
Minor BPS
47.3
-0.3
2.4
60.82
42.1

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816