About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12401237_12405631_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12401237 - 12405631
Intron Length:
4395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTGTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTCTCCTTCATC
Flanking Amino Acid:
ELKKQAEQAKAVKMAEDVLQ
Intron Amino Acid Position:
1049

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
82.5
29.7
Major BPS
75
0.62
1.1
77.2
36
Major PPT
71
0.47
1
65.1
39.8
Minor 5ss
47.1
-0.3
2.5
59.7
39.1
Minor BPS
69.7
0.6
1.7
77.77
38.8

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816