About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12406117_12406766_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12406117 - 12406766
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCCAT
5'SS Class:
major
3'SS Sequence:
TTGGTCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTTCTTTTATT
Flanking Amino Acid:
KMNDELRLKERQLEQIQLEL
Intron Amino Acid Position:
921

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
63.4
42.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.5
0.66
0.8
77.7
36.7
Minor 5ss
45.7
-0.5
2.9
65
46.3
Minor BPS
69.8
0.7
1.5
84.47
36.2

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816