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Intron Name: Anas_platyrhynchos_platyrhynchos_16_12406924_12408210_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12406924 - 12408210

Intron Length:

1287

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGAAG

5'SS Class:

strong_major

3'SS Sequence:

TTATCTTGTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TAACTTTTATCT

Flanking Amino Acid:

ELEQLKSNLTVMEEKLKERE

Intron Amino Acid Position:

869

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

71.3

40.1

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

81.8

0.72

0.9

80.9

36.4

Minor 5ss

31.8

-2.1

3.1

36.5

41.9

Minor BPS

56.1

0.27

1.6

71.08

39.7

Associated Gene:

Gene:

CLIP1

Ensembl Gene ID:

ENSAPLG00000007117

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007436

12384294 - 12440109

55816