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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12409736_12411176_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12409736 - 12411176
Intron Length:
1441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGATGAA
5'SS Class:
major
3'SS Sequence:
CCATATTCGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTTACT
Flanking Amino Acid:
KQIQNLETEKASNLAKELQG
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.35
1.2
63
37.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62.5
0.28
1
62
39.4
Minor 5ss
26.3
-2.7
3.2
31.6
42.8
Minor BPS
67.8
0.64
1.8
89.13
35.2

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816