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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12412104_12415113_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12412104 - 12415113
Intron Length:
3010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGGTT
5'SS Class:
major
3'SS Sequence:
CTGTTAATCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTCTTAAAAT
Flanking Amino Acid:
KLQRELEDTRVATVSEKSRI
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
69.7
40.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
68.2
0.41
0.9
62.4
37.6
Minor 5ss
34.8
-1.7
3.8
47.2
48.3
Minor BPS
70
0.71
1.7
88.96
35.8

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816