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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12420328_12422134_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12420328 - 12422134
Intron Length:
1807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCAA
5'SS Class:
major
3'SS Sequence:
ATTATCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATGAATT
Flanking Amino Acid:
ELLNQLEEEKRKVEDLQFRV
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.2
65
42.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.4
0.53
0.9
66.2
35.1
Minor 5ss
42.7
-0.8
3
56.1
48
Minor BPS
59
0.36
1.9
83.59
36.8

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816