About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12422830_12426079_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12422830 - 12426079
Intron Length:
3250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGCTTC
5'SS Class:
major
3'SS Sequence:
CTACTTTGTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CGATTTTTAACT
Flanking Amino Acid:
VSSKPSRTGLLTETSSRYAR
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
68.7
37.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
65.2
0.34
1.1
67
38.1
Minor 5ss
51
0.04
2.7
69.6
36
Minor BPS
70.2
0.71
1.2
76.8
39.9

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816