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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12426297_12427343_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12426297 - 12427343
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TGTTTTTCAAAG
Flanking Amino Acid:
GKNDGAVAGTRYFQCQPKYG
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
79.9
36
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
75.8
0.58
1
78.1
34.2
Minor 5ss
40.2
-1.1
2.7
50
46.3
Minor BPS
53.3
-0
1.7
61.27
40.6

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816