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Intron Name: Anas_platyrhynchos_platyrhynchos_16_12427469_12439004_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12427469 - 12439004

Intron Length:

11536

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGATTT

5'SS Class:

strong_major

3'SS Sequence:

TTATTGCTTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTTAT

U12 Branch Point Sequence:

AATGCAGTAAAT

Flanking Amino Acid:

RELKIGDRVLVGGTKAGVVR

Intron Amino Acid Position:

222

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

83.3

29.1

Major BPS

73.7

0.59

1.2

65.7

43.2

Major PPT

70.8

0.47

1.1

68.4

42.3

Minor 5ss

-0.6

3.2

62.3

43.4

Minor BPS

44.8

-0.3

2.3

66.26

43.7

Associated Gene:

Gene:

CLIP1

Ensembl Gene ID:

ENSAPLG00000007117

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007436

12384294 - 12440109

55816