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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12439574_12440015_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12439574 - 12440015
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAAGAAT
5'SS Class:
major
3'SS Sequence:
TGCTTGATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTGTGCTTGATT
Flanking Amino Acid:
LLKAPASVATAPAEKAASSE
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
72.3
38.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
75.5
0.57
1
66
44.2
Minor 5ss
33.8
-1.8
3.4
48.8
47.2
Minor BPS
66.2
0.59
1.8
82.57
39.6

Associated Gene:

Gene:
CLIP1
Ensembl Gene ID:
ENSAPLG00000007117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007436
12384294 - 12440109
55816