About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12461318_12461898_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12461318 - 12461898
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCAGCCTTATTT
Flanking Amino Acid:
NISTPSGIPDEWQIFGSIPM
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
77.8
30.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.5
0.71
0.9
77.3
36.8
Minor 5ss
35.4
-1.7
3.3
48
41.4
Minor BPS
58.9
0.36
1.7
72.25
45.1

Associated Gene:

Gene:
ZCCHC8
Ensembl Gene ID:
ENSAPLG00000007582
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007912
12459408 - 12469055
9648