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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12462789_12463397_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12462789 - 12463397
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCTCTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTAACTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
RFGKFKPGVISGELQDALGV
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
74.4
41.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82.6
0.73
0.9
82.5
32.9
Minor 5ss
56.3
0.21
2.5
76.3
39.1
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
ZCCHC8
Ensembl Gene ID:
ENSAPLG00000007582
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007912
12459408 - 12469055
9648