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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12464055_12465921_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12464055 - 12465921
Intron Length:
1867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
ATTTTTTAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CATTTTTTAAGC
Flanking Amino Acid:
DGQEIQVKPKRPKPHCFNCG
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.7
0.62
1
75.3
38
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
60.4
0.31
1.6
66.28
39.9

Associated Gene:

Gene:
ZCCHC8
Ensembl Gene ID:
ENSAPLG00000007582
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007912
12459408 - 12469055
9648