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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12467805_12468119_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12467805 - 12468119
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTTCTGAATT
Flanking Amino Acid:
SVKKIKEAFSVVGSVLYFTN
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.8
34.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
95.8
1.03
0.5
92
19.1
Minor 5ss
48.1
-0.2
2.8
68.1
42.7
Minor BPS
73.9
0.83
1.3
86.99
32

Associated Gene:

Gene:
ZCCHC8
Ensembl Gene ID:
ENSAPLG00000007582
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007912
12459408 - 12469055
9648