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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12468883_12469050_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12468883 - 12469050
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTGCTTCTT
5'SS Class:
weak_major
3'SS Sequence:
CATTCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATTTCTTCACCT
Flanking Amino Acid:
MVQYHQEIEDF
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.3
0.03
1.2
54.7
43.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.9
0.65
0.9
72.7
37.1
Minor 5ss
35.7
-1.6
3.4
50.3
46
Minor BPS
62
0.46
1.8
82.49
39

Associated Gene:

Gene:
ZCCHC8
Ensembl Gene ID:
ENSAPLG00000007582
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007912
12459408 - 12469055
9648