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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12474718_12474820_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12474718 - 12474820
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAAAT
5'SS Class:
major
3'SS Sequence:
CATTTATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CATGTCTAAATA
Flanking Amino Acid:
AMDAQEALARRLERAKKLQE
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.2
80.7
33.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
78.4
0.64
0.8
70.3
40
Minor 5ss
30.6
-2.2
2.9
40.4
45.3
Minor BPS
49.8
-0
1.8
59.13
41.6

Associated Gene:

Gene:
RSRC2
Ensembl Gene ID:
ENSAPLG00000007818
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008105
12472395 - 12482150
9756