About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12474944_12478529_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12474944 - 12478529
Intron Length:
3586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
AATTTGGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ATGTCTTCAATT
Flanking Amino Acid:
RSRSRTRSRSRERKKRIEKP
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
73.2
0.52
1
65.3
44.8
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
65.9
0.58
1.5
78.35
38.5

Associated Gene:

Gene:
RSRC2
Ensembl Gene ID:
ENSAPLG00000007818
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008105
12472395 - 12482150
9756