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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12478674_12479293_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12478674 - 12479293
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
ACCTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGAATTTAAACA
Flanking Amino Acid:
RSHSRSRSRERRHRSRSRDR
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
72.8
0.51
1
68.7
41.5
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
50.6
0.01
1.7
61.06
39

Associated Gene:

Gene:
RSRC2
Ensembl Gene ID:
ENSAPLG00000007818
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020592
12472395 - 12486912
14518
ENSAPLT00000008105
12472395 - 12482150
9756