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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12486022_12486132_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12486022 - 12486132
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAATTC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTACATGTAACA
Flanking Amino Acid:
ALLQITSSEKVLANPQLYAC
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
69.3
36.6
Major BPS
73.9
0.59
1
81
30.2
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
40.5
-1.1
3.5
58.5
46.3
Minor BPS
48.7
-0.1
2.1
66.7
39.4

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173