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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12488553_12489139_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12488553 - 12489139
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CATTTACTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTACTTTCATT
Flanking Amino Acid:
SVNKIHLIIGGKGDYVLSKW
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
70.7
0.47
1
65.7
39.8
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
64.8
0.55
1.7
84.21
37.1

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173