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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12489280_12489909_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12489280 - 12489909
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGTAGAAT
5'SS Class:
major
3'SS Sequence:
AGAATATCTTAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
KKKKHFLFIGNMWDVYSLTL
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1
63.5
35.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
53.9
0.09
1.2
54.5
44.4
Minor 5ss
35.6
-1.6
3.3
47.2
43.2
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173