About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12491449_12492261_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12491449 - 12492261
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTGTT
5'SS Class:
major
3'SS Sequence:
CATATTGCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TACCACTTAATG
Flanking Amino Acid:
SSLVQSWIGTDTIYFLEGIH
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
72
37.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
72.5
0.51
1
65
40.9
Minor 5ss
46.9
-0.3
3.2
71.8
39.2
Minor BPS
57.6
0.1
1.6
59.2
42.4

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173