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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12492306_12492414_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12492306 - 12492414
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TAGAGTTGAACT
Flanking Amino Acid:
FLEGIHENHQISAEGPVSVV
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76
28.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
75.9
0.58
0.8
73.3
30.4
Minor 5ss
39.7
-1.2
3.1
51.8
45.1
Minor BPS
48.5
-0
1.9
66.69
43.8

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173