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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12493333_12493444_F

Intron Information:

Intron Rank:
13
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
12493333 - 12493444
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTCCTTA
5'SS Class:
weak_minor
3'SS Sequence:
CTTACTCAAACAG|G
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTTTCCTTACTC
Flanking Amino Acid:
EAKENLHKIQDSQFVVDYCI
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.8
0.11
1.4
58.5
43.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.5
0.39
1
62.8
37.4
Minor 5ss
65.7
0.53
2
73.9
42.5
Minor BPS
72.1
0.67
1.6
79.01
36.6

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173