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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12493535_12494096_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12493535 - 12494096
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
GTATTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATGTATT
Flanking Amino Acid:
QDMLNYAKVRILKKDDKTIV
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
69.9
41.1
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
79.8
0.67
1
77.1
41.8
Minor 5ss
35.7
-1.6
3.3
45.7
43.5
Minor BPS
47.5
-0.1
2
68.33
42.7

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173