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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12494148_12494656_F

Intron Information:

Intron Rank:
15
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
12494148 - 12494656
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTATCCATA
5'SS Class:
minor
3'SS Sequence:
TGTCTTCATTCAG|G
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTGACCTCAACC
Flanking Amino Acid:
TIVLPSDGTPVLRAQARLTT
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.1
0.03
1.2
55.6
43.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
80
0.67
0.9
77.9
35.5
Minor 5ss
73.7
0.8
1.8
79.8
34.8
Minor BPS
67.9
0.54
1.6
75.78
40.3

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173