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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12494719_12495038_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12494719 - 12495038
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCTTT
5'SS Class:
weak_major
3'SS Sequence:
CTCTTATTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
CTCCTCTTATTT
Flanking Amino Acid:
FYGAFGVEKFSGIAWTEFLN
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
72.6
39.2
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
80.6
0.69
0.8
73.4
36.1
Minor 5ss
57.9
0.27
2.4
73.9
42.6
Minor BPS
54.4
0.22
1.6
68.23
43.4

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173