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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12505292_12505760_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12505292 - 12505760
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAGAG
5'SS Class:
major
3'SS Sequence:
TTCTGAAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGTTTCTGAAAT
Flanking Amino Acid:
TSLANCAFIKGQNLLLPAGT
Intron Amino Acid Position:
1192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.2
58.6
40.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
65.8
0.36
1
59.5
40
Minor 5ss
41.4
-1
3.3
55.2
49
Minor BPS
67.1
0.62
1.5
83.04
37.3

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173