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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12505925_12506466_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12505925 - 12506466
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTAAGT
Flanking Amino Acid:
NNMNLSLSEKLHDVSMLAET
Intron Amino Acid Position:
1247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.3
0.64
0.9
79.2
32.6
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
69.8
0.7
1.6
83.9
37.2

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173