Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12506572_12506969_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12506572 - 12506969

Intron Length:

398

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAATG

5'SS Class:

strong_major

3'SS Sequence:

TTCCAAAATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

AAGTTTTTAACT

Flanking Amino Acid:

MTTILTLLHKVFNCRLIDQD

Intron Amino Acid Position:

1282

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.6

0.8

84.6

33.3

Major BPS

87.3

0.93

0.8

36.5

Major PPT

66.6

0.37

59.1

39.7

Minor 5ss

37.1

-1.5

48.5

47.2

Minor BPS

72.6

0.79

1.1

78.87

37.4

Associated Gene:

Gene:

KNTC1

Ensembl Gene ID:

ENSAPLG00000007872

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008267

12485890 - 12522062

36173