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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12507099_12507834_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12507099 - 12507834
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATTCA
5'SS Class:
major
3'SS Sequence:
TCACTTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATACTTTTATT
Flanking Amino Acid:
NTWQNYKKVLAVALVGVQLA
Intron Amino Acid Position:
1325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
72.7
32.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
71.5
0.48
1
75.4
33.2
Minor 5ss
40
-1.1
2.8
47.4
43.3
Minor BPS
61.3
0.44
1.6
77.57
39.2

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173