About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12507952_12508340_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12507952 - 12508340
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
TCTTTATTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
EWGIQLGEFGISFETVFRQP
Intron Amino Acid Position:
1364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
68.6
39.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.4
0.8
0.7
81.4
29.3
Minor 5ss
39.6
-1.2
2.9
45.7
43.5
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173