About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12511600_12512414_F

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12511600 - 12512414
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
TGTTTTGCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTAAAA
Flanking Amino Acid:
EKWLKNTTAKDDSREKAEVL
Intron Amino Acid Position:
1673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.9
0.47
1.1
71.2
38.9
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
70.8
0.65
1.5
81.76
32.7

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173