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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12512849_12514959_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12512849 - 12514959
Intron Length:
2111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGCAACATAACC
Flanking Amino Acid:
WLCPSVLPSELLQTFTVFLC
Intron Amino Acid Position:
1780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.1
0.63
0.9
70
40.6
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
49.4
-0
1.9
62.35
42.2

Associated Gene:

Gene:
KNTC1
Ensembl Gene ID:
ENSAPLG00000007872
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008267
12485890 - 12522062
36173